How so? 
This is an interesting find. I wonder if fourfold Brahmaviharas are found in ither Indic Dharmas (I’m woefully ignorant in this remark).
Again, I can kinda get what you’re saying here, and the rest is found in the paper; I’m just trying to point out the ways you could express these for people who might be confused with the paper, and need more direct expression of lists. 
Personally, I’ll try to jot down these items from your list later if you don’t already, but I’m also kinda busy these few days, so yeah. 
I mean, @Sphairos can elaborate better (or correct me on this), but it still hinges on the assumption that earlier parts of SNP are indeed earlier.
Now, that’s an assumption I hold as well, but not everyone actually believes that either. 
Take everything from here as my opinion, with a grian of salt!
Vectoral Analysis is a powerful tool, so it should be interesting to to see how it can be used wisely.
If I’m right, your study does show how different layers are found comparatively, but we still need to apply context to deduce which of these layers might be actually earlier or later. Right now, as I understand it, it places SNP againt late Khuddakha material, and ranks them accordingly.
That’s a valuable start, but it can’t yet be anything definitive, can it? 
(The point about shared parallels scoring higher is definitely a point for the argument, though!)
And philological analysis is another powerful tool, but it’s not infallible either, since it can be kind of a circular argument: We say X is early, then Y is like X, so it’s early. But how can we definitely say X is early? Or can we disregard potentially anarchronistic usages of language? Etc…
So yeah, a broader hermeneutics seems indispensable for such analyses. And it’s nice to see that you do that as well, unsurprising considering your Oriental Studies! 
I believe Vectoral Analysis like this is great for informing us of patterns, for us to ask more questions that would be informed with philological, hermeneutical, spiritual inquiries, rather than assuming that “machine tells us this is early / late” or so. So, yeah, some nuance and clear reading of data is needed!
There might be some people who find this kind of data useless, and if you jump hastily to conclusions / present them as facts, they’ll jump right to it (rightfully too, I might add!).
So, this kind of study clearly needs to understand and present its limitations, and acknowledge how pattern-matching can only raise new questions for experts to analyse anew. 
The ideal end-game for such tools, IMO, would be to raise such questions to which once we find some answers with spiritual, philological and historical analyses, in our final arguments, we won’t even have to reference the machine data. Does that make sense? 
Anyways, lots of exciting stuff. I’d been expecting someone to do something like this already, so now that it’s here, there’s quite the work to be done. 
